As most have said above. Getting the engine in is not bad at all. Simplest way is to use E30.de mounts, maybe slightly more expensive but its a tried and tested setup. It gets the engine low and far back too. I have seen far to many were you can see the back of the block!
Manifolds are a pain, there are lots of threads about them on here. You will have to custom make some manifolds, either cut up stock ones or have some fabricated. Fabricated will be better of course as the standard manifolds are very restrictive.
Wiring, M60B40 takes about 3 wires to actually get running. As willnz has said EWS is fine so long as you have all the parts, ie chip and key. I believe there are a few companies out there that will do EWS removal from the loom/ecu.
Gearbox, with a E34 530 V8 5 Speed you can as said by sparkye30, you can use a propshaft from an E36 328. Its strong and shouldnt break under the power. (A few crafted together props can shaft themselves). You will need to change the center bearing to a E30 item
I would pm Jonsku on here regarding if you use E34 540 V8 6 speed to find out what propshaft to use.
The 5 speed box has its benefits, its believed to be stronger. I certainly have seen less with knackered syncros. Although you simply cant bolt a oem clutch on. The 530 V8 clutch wont be able to handle the extra power of the 4.0 V8. The 5 speed box does bolt in really well, its does become an arse when throwing it all together. However 2020 vision can do a billet flywheel (which transforms the way the v8 responds) and helix can supply a clutch suitable for your needs. Any clutch place can if you give them the details. I have a 5 speed gearbox, I love it, although I do wish I had another gear for the motorway.
I use the 20mm subframe spacers, well worth it, just gives a little more room around and is a god send when you are trying to work on it after its all in. Brings then engine down a touch too.
As willnz stated about the E34 remote mount oil filter, with this simply use your existing fittings and have some longer hoses made for this. It enables it to be located on the inner wing (or wherever you choose) to allow for room to get the coolant pipes to the radiator.
Radiator wise, you can use a E34 item, however you have to chop the chassis rails to fit it. I use a E36 M3 rad, believe same as a Z3 item, and for little money Mishmoto do a really thick alloy one. The e36 rad fits direct onto the oem mounts. I struggled with temperatures whilst drifting so had to open up my front end (still looks stock) and move the coolers (photo below). On road it was fine.
I highly recommend looking at the cooling side if you are using it for drifting/track. These engines run quite hot as standard. If you are drifting I say a must is a oil cooler and also a power-steering cooler. The power-steering gets really hot in these and fluid failure whilst drifting is not nice!

Brake wise, you can go for the servo mounted by the headlight, although to me its seems alot of work. I have seen ones that look good in photos (jonskus) but havent seen one in the flesh the doesnt flex like hell. You can go servo-less, which is great for a out and out track car but on the road I wouldnt sacrifice the ease of a servo system. I have mounted my servo behind the dash, I agree on a stock looking road car is a bit of a lose to give up the glovebox, but its very simple to do and utilizes the stock braking system.
The beauty of the V8 conversion is the fact is a stock motor, so no matter what the weather is/temperature it will always work. They are cheap to replace and compared to a reliably built turbo motor that will have the reliability of the V8, its so much cheaper
Best option is to try and source a manual 540. Gearboxes arent common for sale, when they are they cant be tested and are fucking expensive. If you get a complete car then atleast it can be tested. If you dont mind using the 5 speed box then look for a 530 V8